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Reference for MODENA (version 0084 is used in this web server):
Akito Taneda, Multi-objective optimization for RNA design with multiple target secondary structures, BMC Bioinformatics 16:280 (2015).

Reference for RactIP (version 1.0.1 is used in this web server):
Kato Y., Sato K., Hamada M., Watanabe Y., Asai K., Akutsu T., RactIP: fast and accurate prediction of RNA-RNA interaction using integer programming, Bioinformatics 26, i460-6 (2010).

Reference for The Vienna RNA package (version 2.4.14 is used in this web server):
R. Lorenz, S.H. Bernhart, C. Honer Zu Siederdissen, H. Tafer, C. Flamm, P.F. Stadler, I.L. Hofacker, ViennaRNA package 2.0., Algorithms Mol. Biol. 6:26 (2011).

Reference for forna (RNA secondary structure visualization tool)
Kerpedjiev, P., Hammer, S., Hofacker, IL.. Forna (force-directed RNA): Simple and effective online RNA secondary structure diagrams. Bioinformatics 31(20):3377-9 (2015).

Secondary structure diagrams shown in the top page were generated by forna.

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